I set up a 29 Gallon Bio Cube with Eco Complete, plants and water from my outdoor Koi pond. I ran it without fish for a couple weeks and then I brought in my two small koi for the winter. In the beginning Ammonia, Nitrite and Nitrate shot up which I expected. Now after weeks of water changes Ammonia is finally pretty much zero but Nitrite is off the charts and Nitrate is at the middle of the road. I think the nitrogen cycle still has a ways to go until everything zeros out. I feel I have enough bacteria eating my ammonia but not enough to eat the Nitrite yet. It's been over two years since I started a tank (my original 55 gallon is still going strong) so I'm a little rusty. This past week brown algae has taken over my plants, rocks and the walls of my tank. I think this is due to the high Nitrite levels? Will the brown algae go away when the nitrogen cycle reaches the last stage and the new aquarium is finally established or should I be doing something else to get rid of it? Right now all I'm doing is scrubbing the sides of the tank before I do a water change.