I would use a syphon and suck out as many as them as you can before you use the FWE, that many dying can foul a tank if not careful. How big is that tank? Suck them off the
LR, sand glass. And as there dying after you use the FWE I would suck them up, leaving a lower number behind to foul the tank.
Make water and be ready for a water change if things go bad.