If you really intend on cleaning with bleach, I would rinse with water over and over again afterwards. Use a small dose of bleach in water to start with. I don't know the correct amounts though.
You should keep the filters (or filter media) of those two tanks running on the 90
gal. That way you can restart the other tanks immediatly with your seeded filters. I would first check on water parameters for a couple of days before adding any fish to the tank when you restart.
HTH
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