Leaving out the media still allows plants outcompete bacteria for ammonium. Perhaps it should be said there are natural aquariums, such as TankGirl's project, and plants as filtration, which still have some powered components.
2 cents: I moved my natural project to a 10g a few months ago, increased plant load and diversity, then added an
HOB with no media (but lidless with some plants in the media compartment). The tank is going better.
NO3 reads 10, pH has dropped to 7 (I have a layer of peat under the substrate and Hagen
CO2), and the tank is pretty stable. I'm thinking of switching it to high light, since it isn't much more work and at this point I'm pretty sure I'll not get the emersed growth I hoped for without a cover (plexi dome?) to keep humidity high.
Here's a pic -- during the day it gets sunlight from the south facing window.
I've since removed all biomedia from my 8g+10g system, which is a high current and light tank. Again, no issues and no ammonia reading. Plants look real good but growth has been faster, increasing maintenence.
JME: I'm becoming of the opinion that biomedia is as unnecessary as carbon for healthy, reasonably stocked, well planted tanks. Plants are amazing.