Acknowledging that BB can/does live in the Fluval sponge filter elements, it would be most beneficial to protect that BB, and rinse-off detritus in "old tank water" as opposed to a tap water rinse. However, if the sponges are really clogged, then yes, a tap water rinse seems in order. Any BB is a good thing, whether they reside in bio-mech or in the sponges, or along the walls of the Fluval canister for that matter.
Just so you know your BB will only grow to the amount needed to convert the ammonia/nitrites that your bio-load produces. Most of the time your bio-media is more than capable of housing enough BB. It won't hurt in the Fluval canisters to use sponges as a supplemental bio-media but their design is for detritus collection. The long yellow sponges on the sides have larger pore openings for trapping larger detritus and the black sponge that fits in the basket has a much tighter pore structure for catching much smaller detritus. So the point I'm trying to make OP is that their basic function is for detritus collection with bio-capability being an added bonus if you wish to use it for that also.
I found that using a Fluval 406 in my 55's that housed 2-8+ fancy GF each needed thorough sponge cleaning every 2 weeks due to the amount of waste/detritus they collected. I also run Wisper EX70's on the other end of the tanks.
On my 220g I run 4- Fluval 406 canisters. When I added the 4th one I used it for only the sponges that came with the unit and bio-media in the other 3 baskets. Since I'm very diligent about keeping the other 3 cleaned I decided to let this one run for 4 months. Before the 4 months were up I noticed my nitrates rising up to over 30ppm whereas that tank normally runs on 10ppm nitrates weekly with 50% WC's. I couldn't get the nitrates down unti I took that canister off for cleaning. Man those sponges were full of detritus. I rinsed them till the water ran clear, did a 50% WC in the tank, and my nitrate levels dropped. Point of the story is if the sponges are not adequately rinsed they will over time cause nitrate buildups in the tank.
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