Mr Limpet is talking about your actual filtration system. You can have 2 separate filters plugged in and running to boost filtration (there's really no such thing as too much). You always want something rated much higher than your actual tank size. For example, I have a 48 gallon and my filter is rated up to 70 gallons. I just ordered a Fluval 405 which is rated for 100 gallons and I'll be running both for a time until the new filter is properly seeded.
Since you're going through a mini cycle, I recommend vacuuming sections of the gravel at a time, and not to do a heavy cleaning of the entire substrate at once. Maybe do a good vac of 25%, then another 25% a couple days later, etc... Since your not adding fish until the mini cycle is over, you don't need to rush too quickly. The vast majority of the beneficial bacteria is in the filter media as Mr Limpet said...but if you're fighting through a mini cycle, I'd still be cautious.